Survival-associated meQTLs across different cancer types


We identified 23,432 meQTLs associated with patient overall survival across different cancer types at FDR < 0.05.


e.g., "BLCA"
e.g., "rs11600543"


Cancer type
SNP ID
SNP position (hg19)
Alleles (A/a)
log-rank test p-value
Sample size
Median survival time AA
Median survival time Aa
Median survival time aa
Dispaly
THYM rs150780629 chr20:29524177 C/G 2.67E-13 118 38.13 50.53 6 KM Plot
THYM rs150786203 chr11:125585040 T/C 0.000188 119 44.38 35.67 23.42 KM Plot
THYM rs150788021 chr4:70064421 A/T 5.73E-13 118 39.75 49.6 6 KM Plot
THYM rs150868862 chr2:30791286 C/CAT 1.53E-8 118 36.4 50.13 33.13 KM Plot
THYM rs150900613 chr5:149866587 AC/A 1.77E-8 117 41.77 35.13 12.63 KM Plot
THYM rs150907750 chr4:12563037 AC/CC 1.01E-6 118 38.23 57.27 12.78 KM Plot
THYM rs150973701 chr1:227445454 C/CA 0.000137 118 42.9 37.13 19.63 KM Plot
THYM rs151198210 chr4:70103766 G/A 4.7E-13 119 41.77 35 6 KM Plot
THYM rs1512655 chr6:117116427 A/G 6.17E-5 114 19.03 50.97 39.75 KM Plot
THYM rs1512657 chr6:117117628 G/C 6.17E-5 114 19.03 50.97 39.75 KM Plot
THYM rs1512658 chr6:117122495 G/A 5.68E-5 115 19.03 50.97 38.83 KM Plot
THYM rs1513599 chr1:227363765 A/G 0.000123 119 19.63 37.13 42.82 KM Plot
THYM rs1513615 chr1:227447728 C/T 0.000123 119 42.82 37.13 19.63 KM Plot
THYM rs1513619 chr1:227344817 T/C 0.000123 119 19.63 37.13 42.82 KM Plot
THYM rs1527969 chr7:45310492 G/A 2.22E-5 119 50.08 35.13 14.9 KM Plot